Find out the percentage of missing values in each column in the given dataset
How about this? I think I actually found something similar on here once before, but I'm not seeing it now...
percent_missing = df.isnull().sum() * 100 / len(df)
missing_value_df = pd.DataFrame({'column_name': df.columns,
'percent_missing': percent_missing})
And if you want the missing percentages sorted, follow the above with:
missing_value_df.sort_values('percent_missing', inplace=True)
As mentioned in the comments, you may also be able to get by with just the first line in my code above, i.e.:
percent_missing = df.isnull().sum() * 100 / len(df)
In Python, how to view the percentage of missing values per each column?
give this a try:
my_df.isnull().sum()/len(my_df)
Is there a way to calculate the percentage of NA's in each column of a dataframe, but with the df split into separate groups?
Grouped by 'programme', get the mean
of NA elements in the other columns, gather
to 'long' format and spread
back to 'wide' format
library(tidyverse)
df %>%
group_by(programme) %>%
summarise_all(funs(mean(is.na(.)))) %>%
gather(variables, val, -programme) %>%
spread(programme, val)
# A tibble: 3 x 4
# variables A B C
# <chr> <int> <int> <int>
#1 v1 0 1 0
#2 v2 1 0 0
#3 v3 0 0 1
R: Calculate percentage of missing Values (NA) per day for a Column in a data frame using panel data and remove the days with missing data of over 25%
If you summarize()
, you lose lots of information on the individual days. Furthermore, use group_by()
before further dplyr verbs. You can calculate the percentage of NA by dividing the sum of NA by the sum of days. as_tibble()
is only used to better show the number of rows, it would work without it too. I added a column "CountDate" so that you know how many times the same day appears in your dataframe.
Data %>% as_tibble() %>%
group_by(Date) %>%
mutate(CountDate = n(), PercNA = sum(is.na(Size))/n()*100)
# A tibble: 27 x 5
# Groups: Date [9]
Product Date Size CountDate PercNA
<chr> <chr> <int> <int> <dbl>
1 A 01.09.2018 10 3 0
2 A 02.09.2018 9 3 0
3 A 03.09.2018 NA 3 100
4 A 04.09.2018 3 3 0
5 A 05.09.2018 4 3 0
6 A 11.11.2020 5 3 33.3
7 A 12.11.2020 3 3 0
8 A 13.11.2020 NA 3 33.3
9 A 14.11.2020 6 3 0
10 B 01.09.2018 7 3 0
# ... with 17 more rows
To remove the dates having >25% NA, just filter()
:
Data %>% as_tibble() %>%
group_by(Date) %>%
mutate(CountDate = n(), PercNA = sum(is.na(Size))/n()*100) %>%
filter(PercNA <25) %>%
ungroup()
# A tibble: 18 x 5
Product Date Size CountDate PercNA
<chr> <chr> <int> <int> <dbl>
1 A 01.09.2018 10 3 0
2 A 02.09.2018 9 3 0
3 A 04.09.2018 3 3 0
4 A 05.09.2018 4 3 0
5 A 12.11.2020 3 3 0
6 A 14.11.2020 6 3 0
7 B 01.09.2018 7 3 0
8 B 02.09.2018 4 3 0
9 B 04.09.2018 4 3 0
10 B 05.09.2018 6 3 0
11 B 12.11.2020 4 3 0
12 B 14.11.2020 7 3 0
13 C 01.09.2018 3 3 0
14 C 02.09.2018 4 3 0
15 C 04.09.2018 2 3 0
16 C 05.09.2018 4 3 0
17 C 12.11.2020 7 3 0
18 C 14.11.2020 5 3 0
Determine percentage of rows with missing values in a dataframe in R
It's best to try and avoid loops in R where possible, since they can get messy and tend to be quite slow. For this sort of thing, dplyr library is perfect and well worth learning. It can save you a lot of time.
You can create a data frame with both variables by first grouping by subject and part, and then performing a summary of the grouped data frame:
df2 = df1 %>%
dplyr::group_by(subject, part) %>%
dplyr::summarise(
sad_mean = mean(na.omit(sad)),
na_count = (sum(is.na(sad) / n()) * 100)
)
df2
# A tibble: 8 x 4
# Groups: subject [2]
subject part sad_mean na_count
<dbl> <dbl> <dbl> <dbl>
1 1 0 4.75 0
2 1 1 2 50
3 1 2 2.5 50
4 1 3 1.67 25
5 2 0 5.5 50
6 2 1 4.5 50
7 2 2 4 50
8 2 3 4 25
Return Column(s) if they Have a certain Percentage of NaN Values (Python)
Based on the responses from https://datascience.stackexchange.com/q/12645.
na_count_mask = df.isna().sum(axis=0) >= (col_count // 4)
res_df = df.loc[na_count_mask]
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