After Conda Update, Python Kernel Crashes When Matplotlib Is Used

After conda update, python kernel crashes when matplotlib is used

Update 2021-11-06

• The default pkgs/main channel for conda has reverted to using freetype 2.10.4 for Windows, per main / packages / freetype.
• If you are still experiencing the issue, use conda list freetype to check the version: freetype != 2.11.0
  
  • If it is 2.11.0, then change the version per the solution, or conda update --all (providing your default channel isn't changed in the .condarc config file).

Solution

• If this is occurring after installing Anaconda, updating conda or freetype since Oct 27, 2021.
• Go to the Anaconda prompt and downgrade freetype 2.11.0 in any affected environment.
  
  • conda install freetype=2.10.4
• Relevant to any package using matplotlib and any IDE
  
  • For example, pandas.DataFrame.plot and seaborn
  • Jupyter, Spyder, VSCode, PyCharm, command line.

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Discovery

• An issue occurs after updating with the most current updates from conda, released Friday, Oct 29.
• After updating with conda update --all, there's an issue with anything related to matplotlib in any IDE (not just Jupyter).
  
  • I tested this in JupyterLab, PyCharm, and python from the command prompt.
  • PyCharm: Process finished with exit code -1073741819
  • JupyterLab: kernel just restarts and there are no associated errors or Traceback
  • command prompt: a blank interactive matplotlib window will appear briefly, and then a new command line appears.
• The issue seems to be with conda update --all in (base), then any plot API that uses matplotlib (e.g. seaborn and pandas.DataFrame.plot) kills the kernel in any environment.
• I had to reinstall Anaconda, but do not do an update of (base), then my other environments worked.
• I have not figured out what specifically is causing the issue.
• I tested the issue with python 3.8.12 and python 3.9.7
• Current Testing:
  
  • Following is the conda revision log.
  • Prior to conda update --all this environment was working, but after the updates, plotting with matplotlib crashes the python kernel

  2021-10-31 10:47:22  (rev 3)
     bokeh  {2.3.3 (defaults/win-64) -> 2.4.1 (defaults/win-64)}
     click  {8.0.1 (defaults/noarch) -> 8.0.3 (defaults/noarch)}
     filelock  {3.0.12 (defaults/noarch) -> 3.3.1 (defaults/noarch)}
     freetype  {2.10.4 (defaults/win-64) -> 2.11.0 (defaults/win-64)}
     imagecodecs  {2021.6.8 (defaults/win-64) -> 2021.8.26 (defaults/win-64)}
     joblib  {1.0.1 (defaults/noarch) -> 1.1.0 (defaults/noarch)}
     lerc  {2.2.1 (defaults/win-64) -> 3.0 (defaults/win-64)}
     more-itertools  {8.8.0 (defaults/noarch) -> 8.10.0 (defaults/noarch)}
     pyopenssl  {20.0.1 (defaults/noarch) -> 21.0.0 (defaults/noarch)}
     scikit-learn  {0.24.2 (defaults/win-64) -> 1.0.1 (defaults/win-64)}
     statsmodels  {0.12.2 (defaults/win-64) -> 0.13.0 (defaults/win-64)}
     sympy  {1.8 (defaults/win-64) -> 1.9 (defaults/win-64)}
     tqdm  {4.62.2 (defaults/noarch) -> 4.62.3 (defaults/noarch)}
     xlwings  {0.24.7 (defaults/win-64) -> 0.24.9 (defaults/win-64)}

• The issue seems to be freetype
  
  • Downgrading from 2.11.0 to 2.10.4 resolved the issue and made the environment work with matplotlib
• Went to post a bug report and discovered there is [Bug]: Matplotlib crashes Python #21511

spyder's kernel dies when I try to make a plot

This is likely a duplicate of my problem.

Spyder 5.1.5 creates a new kernel after running a custom function

There is a potential solution in my answers. Otherwise, you can also downgrade freetype from 2.11.0 to 2.10.4 by doing conda install freetype=2.10.4 as suggested by Eheran1 in this GitHub post.

https://github.com/spyder-ide/spyder/issues/16659

Spyder 5.1.5 creates a new kernel after running a custom function

Possible solution: The problem seems to be with the newest matplotlib function (3.4.3), when I downgraded matplotlib to 3.3.4 again the kernel problem no longer occured.

Solution: Downgrade freetype from 2.11.0 to 2.10.4 by doing conda install freetype=2.10.4.

Python: matplotlib.pyplot.show() is not showing the plot

As of late, conda and matplotlib have been having issues.

You can try to downgrade freetype from 2.11.0 to 2.10.4 by doing conda install freetype=2.10.4

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