How to Change .Libpaths() Permanently in R

Change R default library path using .libPaths in Rprofile.site fails to work

I generally try to keep all of my packages in one library, but if you want to add a library why not append the new library (which must already exist in your filesystem) to the existing library path?

.libPaths( c( .libPaths(), "~/userLibrary") )
 # obviously this would need to be a valid file directory in your OS
 # min just happened to be on a Mac that day

Or (and this will make the userLibrary the first place to put new packages):

.libPaths( c( "~/userLibrary" , .libPaths() ) )

Then I get (at least back when I wrote this originally):

> .libPaths()
[1] "/Library/Frameworks/R.framework/Versions/2.15/Resources/library"
[2] "/Users/user_name/userLibrary"  

The .libPaths function is a bit different than most other nongraphics functions. It works via side-effect. The functions Sys.getenv and Sys.setenv that report and alter the R environment variables have been split apart but .libPaths can either report or alter its target.

The information about the R startup process can be read at ?Startup help page and there is RStudio material at: https://support.rstudio.com/hc/en-us/articles/200549016-Customizing-RStudio

In your case it appears that RStudio is not respecting the Rprofile.site settings or perhaps is overriding them by reading an .Rprofile setting from one of the RStudio defaults. It should also be mentioned that the result from this operation also appends the contents of calls to .Library and .Library.site, which is further reason why an RStudio- (or any other IDE or network installed-) hosted R might exhibit different behavior.

Since Sys.getenv() returns the current system environment for the R process, you can see the library and other paths with:

Sys.getenv()[ grep("LIB|PATH", names(Sys.getenv())) ]

The two that matter for storing and accessing packages are (now different on a Linux box):

R_LIBS_SITE                          /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
R_LIBS_USER                          /home/david/R/x86_64-pc-linux-gnu-library/3.5.1/
 

How to change and remove default library location?

Here be dragons.

assign(".lib.loc", "\your\preferred\library", envir = environment(.libPaths))

How do I change the default library path for R packages

See help(Startup) and help(.libPaths) as you have several possibilities where this may have gotten set. Among them are

• setting R_LIBS_USER
• assigning .libPaths() in .Rprofile or Rprofile.site

and more.

In this particular case you need to go backwards and unset whereever \\\\The library/path/I/don't/want is set.

To otherwise ignore it you need to override it use explicitly i.e. via

library("somePackage", lib.loc=.libPaths()[-1])

when loading a package.

Remove a library from .libPaths() permanently without Rprofile.site

Just set the environment variable R_LIBS in Windows to something like

R_LIBS=C:/Program Files/R/R-2.15.2/library

Restart R.

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