Command to See 'R' Path That Rstudio Is Using

Command to see 'R' path that RStudio is using

(Edited to reflect fact that this is apparently a Windows-specific solution.)

Here on Windows, I'd use the following, for reasons discussed here by Henrik Bengtsson near the start of a long thread on the subject.

file.path(R.home("bin"), "R")

This is better than using file.path(R.home(), "bin", "R") in several settings alluded to in the "Value" section of this snippet from help(R.home):

Details:

The R home directory is the top-level directory of the R
installation being run.

[...]

Value:

A character string giving the R home directory or path to a
particular component. Normally the components are all subdirectories
of the R home directory, but this may not be the case in a Unix-like
installation. [...] The return value for "modules" and on Windows
"bin" is to a sub-architecture-specific location.

Getting path of an R script

Use source("yourfile.R", chdir = T)

Get the path of current script

In RStudio, you can get the path to the file currently shown in the source pane using

rstudioapi::getSourceEditorContext()$path

If you only want the directory, use

dirname(rstudioapi::getSourceEditorContext()$path)

If you want the name of the file that's been run by source(filename), that's a little harder. You need to look for the variable srcfile somewhere back in the stack. How far back depends on how you write things, but it's around 4 steps back: for example,

fi <- tempfile()
writeLines("f()", fi)
f <- function() print(sys.frame(-4)$srcfile)
source(fi)
fi

should print the same thing on the last two lines.

Automatically finding the path of current R project in R Studio

It sounds like the rprojroot package will provide what you're looking for -- in particular, the find_rstudio_root_file() function should provide what you need.

Change R default library path using .libPaths in Rprofile.site fails to work

I generally try to keep all of my packages in one library, but if you want to add a library why not append the new library (which must already exist in your filesystem) to the existing library path?

.libPaths( c( .libPaths(), "~/userLibrary") )
 # obviously this would need to be a valid file directory in your OS
 # min just happened to be on a Mac that day

Or (and this will make the userLibrary the first place to put new packages):

.libPaths( c( "~/userLibrary" , .libPaths() ) )

Then I get (at least back when I wrote this originally):

> .libPaths()
[1] "/Library/Frameworks/R.framework/Versions/2.15/Resources/library"
[2] "/Users/user_name/userLibrary"  

The .libPaths function is a bit different than most other nongraphics functions. It works via side-effect. The functions Sys.getenv and Sys.setenv that report and alter the R environment variables have been split apart but .libPaths can either report or alter its target.

The information about the R startup process can be read at ?Startup help page and there is RStudio material at: https://support.rstudio.com/hc/en-us/articles/200549016-Customizing-RStudio

In your case it appears that RStudio is not respecting the Rprofile.site settings or perhaps is overriding them by reading an .Rprofile setting from one of the RStudio defaults. It should also be mentioned that the result from this operation also appends the contents of calls to .Library and .Library.site, which is further reason why an RStudio- (or any other IDE or network installed-) hosted R might exhibit different behavior.

Since Sys.getenv() returns the current system environment for the R process, you can see the library and other paths with:

Sys.getenv()[ grep("LIB|PATH", names(Sys.getenv())) ]

The two that matter for storing and accessing packages are (now different on a Linux box):

R_LIBS_SITE                          /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
R_LIBS_USER                          /home/david/R/x86_64-pc-linux-gnu-library/3.5.1/
 

How to get R to recognize your working directory as its working directory?

You should copy shortcut to R (R.lnk file) to desire folder. Then in "Properties" (right mouse button -> last option) delete anything in field "Start in..." in second tab ("Shortcut"?). If you start R with this shortcut working directory will be that one where the shortcut is.

I don't have english version of Windows so I'm not sure about field names, but they should be easy to find.

Similar questions were in R-windows-faq:

2.5 How do I run it?

2.10 How can I keep workspaces for different projects in different directories?

2.14 What are HOME and working directories?

In 2.14 is mentioned that

The working directory is the directory from which Rgui or Rterm was launched, unless a shortcut was used when it is given by the `Start in' field of the shortcut's properties.

How to use Rstudio relative paths

You could change the working directory. Get the address in the beginning getwd(), replace it by your project folder with setwd(). Then, when accessing a file just use read.table("./folder/file.R").

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